Edaphobacter is a genus of Gram-negative, rod shaped bacteria.[1] It contains seven species:[2]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI).[3]
| 16S rRNA based LTP_10_2024[4][5][6]
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120 marker proteins based GTDB 10-RS226[7][8][9]
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Bryocella elongata
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Edaphobacter dinghuensis
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Edaphobacter lichenicola
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| Granulicella~
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Granulicella sibirica
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Granulicella aggregans
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Granulicella rosea
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Granulicella tundricola
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Granulicella pectinivorans
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Granulicella arctica
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Granulicella sapmiensis
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| Granulicella
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G. cerasi Yamada et al. 2014
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G. mallensis Mannisto et al. 2012
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G. sapmiensis Mannisto et al. 2012
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| Edaphobacter
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Granulicella pectinivorans Pankratov & Dedysh 2010
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Granulicella sibirica Oshkin et al. 2019
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Granulicella rosea Pankratov & Dedysh 2010
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Granulicella tundricola Mannisto et al. 2012
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Granulicella aggregans Pankratov & Dedysh 2010
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Granulicella arctica Mannisto et al. 2012
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E. lichenicola Belova et al. 2018
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Tunturiibacter psychrotolerans corrig. Messyasz et al. 2024
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Tunturiibacter empetritectus corrig. Messyasz et al. 2024
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Tunturiibacter gelidoferens corrig. Messyasz et al. 2024
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E. acidisoli Xia et al. 2017b
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E. dinghuensis Wang et al. 2016
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E. paludis Huber et al. 2024
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E. bradus Xia et al. 2018b
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See also
References
- ^ Koch, I. H.; Gich, F.; Dunfield, P. F.; Overmann, J. (1 May 2008). "Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils". International Journal of Systematic and Evolutionary Microbiology. 58 (5): 1114–1122. doi:10.1099/ijs.0.65303-0. PMID 18450699.
- ^ a b Edaphobacter in LPSN; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research. 53: D1–D12. doi:10.1093/nar/gkaf1110.
- ^ Schoch CL; et al. "Edaphobacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-06-05.
- ^ "The LTP". Retrieved 10 December 2024.
- ^ "LTP_all tree in newick format". Retrieved 10 December 2024.
- ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
- ^ "GTDB release 10-RS226". Genome Taxonomy Database. Retrieved 1 May 2025.
- ^ "bac120_r226.sp_label". Genome Taxonomy Database. Retrieved 1 May 2025.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 1 May 2025.
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- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Metamonada
- Discoba
- Diaphoretickes
- Hacrobia
- Cryptista
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Amorphea
- Amoebozoa
- Opisthokonta
- Animalia
- Fungi
- Mesomycetozoea)
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Candidate Phyla
Radiation |
- "Elulimicrobiota"
- Minisyncoccota
- "Absconditibacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Baikalibacteria"
- "Dojkabacteriia"
- "Doudnabacteria"
- "Gracilibacteriia"
- "Howlettbacteria"
- "Katanibacteriia"
- "Kazanbacteria"
- "Microgenomatia"
- Minisyncoccia
- "Patescibacteriia"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"
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| | | "Synergistetes" | |
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| "Thermocalda" | |
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| | | "Cyanoprokaryota" |
- Cyanobacteriota
- "Margulisiibacteriota"
- "Marinamargulisbacteria"
- "Riflemargulisbacteria"
- "Saganbacteria"
- "Termititenacia"
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| "Firmicutes" |
- Bacillota
- Bacillota D
- Bacillota E
- "Fermentithermobacillia"
- Sulfobacillia
- Symbiobacteriia
- Thermaerobacteria
- Bacillota G
- "Hydrogenisporia"
- Limnochordia
- "Clostridiota"
- "Clostridiia"
- "Thermoanaerobacteria"
- Thermosediminibacteria
- "Desulfotomaculota"
- "Carboxydocellia"
- "Carboxydothermia"
- "Dehalobacteriia"
- Desulfitobacteriia
- Desulfotomaculia
- "Moorellia"
- Peptococcia
- Syntrophomonadia
- "Thermacetogeniia"
- Thermincolia
- "Halanaerobiaeota"
- "Selenobacteria"
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| Incertae sedis |
- "Qinglongiota"
- "Salinosulfoleibacteria"
- "Teskebacteria"
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Taxon identifiers |
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| Edaphobacter | |
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